Provided by: ants_2.2.0-1ubuntu1_amd64 bug


       antsApplyTransforms - part of ANTS registration suite



              antsApplyTransforms,  applied  to  an  input  image,  transforms  it according to a
              reference image and a transform (or a set of transforms).

       -d, --dimensionality 2/3/4

              This option forces the image to be treated as a specified-dimensional image. If not
              specified, antsWarp tries to infer the dimensionality from the input image.

       -e, --input-image-type 0/1/2/3

              Option specifying the input image type of scalar (default), vector, tensor, or time
              series.  <VALUES>: 0

       -i, --input inputFileName

              Currently, the only input objects supported are image objects. However, the current
              framework allows for warping of other objects such as meshes and point sets.

       -r, --reference-image imageFileName

              For  warping  input  images, the reference image defines the spacing, origin, size,
              and direction of the output warped image.

       -o, --output warpedOutputFileName

              [warpedOutputFileName or  compositeDisplacementField,<printOutCompositeWarpFile=0>]

              One can either output the warped image or, if the boolean is set, one can print out
              the displacement field based on the composite transform and the reference image.  A
              third  option is to compose all affine transforms and (if boolean is set) calculate
              its inverse which is then written to an ITK file

       -n, --interpolation Linear
              NearestNeighbor                        MultiLabel[<sigma=imageSpacing>,<alpha=4.0>]
              Gaussian[<sigma=imageSpacing>,<alpha=1.0>]   BSpline[<order=3>]  CosineWindowedSinc
              WelchWindowedSinc              HammingWindowedSinc              LanczosWindowedSinc

              Several  interpolation  options  are  available  in  ITK.  These have all been made

       -t, --transform transformFileName

              Several transform options are supported including all  those  defined  in  the  ITK
              library  in  addition  to  a  deformation  field  transform.  The  ordering  of the
              transformations follows the ordering specified on the  command  line.  An  identity
              transform  is  pushed onto the transformation stack. Each new transform encountered
              on the command line is also pushed onto the transformation stack.   Then,  to  warp
              the  input object, each point comprising the input object is warped first according
              to the last transform pushed  onto  the  stack  followed  by  the  second  to  last
              transform,  etc.  until  the  last  transform  encountered  which  is  the identity
              transform. Also, it should be noted that the inverse transform can be  accommodated
              with  the  usual  caveat  that  such  an  inverse  must be defined by the specified
              transform class

       -f, --default-value value

              Default voxel value to be used with input images only. Specifies  the  voxel  value
              when  the  input  point  maps  outside the output domain. With tensor input images,
              specifies the default voxel eigenvalues.

       -z, --static-cast-for-R value

              forces static cast in ReadTransform (for R)


              Use 'float' instead of 'double' for computations.  <VALUES>: 0

       -v, --verbose (0)/1

              Verbose output.


              Print the help menu (short version).


              Print the help menu.  <VALUES>: 1