Provided by: e-mem_1.0.1-2_amd64
e-mem - finds position and length of all Maximal Exact Matches (MEMs) for very large genomes
e-mem [options] <reference-file> <query-file>
e-mem finds and outputs the position and length of all maximal exact matches (MEMs) between <query-file> and <reference-file>
-n match only the characters a, c, g, or t they can be in upper or in lower case -l set the minimum length of a match. The default length is 50 -b compute forward and reverse complement matches -r only compute reverse complement matches -c report the query-position of a reverse complement match relative to the original query sequence -F force 4 column output format regardless of the number of reference sequence input -L show the length of the query sequences on the header line -d set the split size. The default value is 1 -t number of threads. The default is 1 thread -h show possible options
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.