Provided by: ea-utils_1.1.2+dfsg-5_amd64
fastq-clipper - ea-utils: removes one or more adapter sequences from the fastq file
usage: fastq-clipper [options] <fastq-file> <adapters> Removes one or more adapter sequences from the fastq file. Adapter sequences are colon-delimited. Stats go to stderr, unless -o is specified.
-h This help -o FIL Output file (stats to stdout) -p N Maximum difference percentage (10) -m N Minimum clip length (1) -l N Minimum remaining sequence length (15) -x [N] Extra match length past adapter length, N =-1 : search all N = 0 : search only up to adapter length -e End-of-line (default) -b Beginning-of-line (not supported yet)