Provided by: genometools_1.5.10+ds-3_amd64
gt-seqfilter - Filter the given sequence file(s) and show the results on stdout.
gt seqfilter [option ...] [sequence_file ...]
-minlength [value] set minimum length a sequence must have to pass the filter (default: undefined) -maxlength [value] set maximum length a sequence can have to pass the filter (default: undefined) -maxseqnum [value] set the maximum number of sequences which can pass the filter (default: undefined) -sample [value] set a probability for each sequence to pass the filter (default: 1.000000) -step [value] only every step-th sequence passes the filter (default: 1) -nowildcards [yes|no] filter out seqences containing wildcards (default: no) -width [value] set output width for FASTA sequence printing (0 disables formatting) (default: 0) -o [filename] redirect output to specified file (default: undefined) -gzip [yes|no] write gzip compressed output file (default: no) -bzip2 [yes|no] write bzip2 compressed output file (default: no) -force [yes|no] force writing to output file (default: no) -help display help and exit -version display version information and exit
Report bugs to https://github.com/genometools/genometools/issues.