Provided by: genometools_1.5.10+ds-3_amd64 bug

NAME

       gt - The GenomeTools genome analysis system.

SYNOPSIS

       gt [option ...] [tool | script] [argument ...]

DESCRIPTION

       -i [yes|no]
           enter interactive mode after executing tool or script

       -q [yes|no]
           suppress warnings

       -test [yes|no]
           perform unit tests and exit

       -seed [value]
           set seed for random number generator manually. 0 generates a seed from current time
           and process id

       -help
           display help and exit

       -version
           display version information and exit

       Tools:

       ·   bed_to_gff3

       ·   cds

       ·   chain2dim

       ·   chseqids

       ·   clean

       ·   compreads

       ·   condenseq

       ·   congruence

       ·   convertseq

       ·   csa

       ·   dot

       ·   dupfeat

       ·   encseq

       ·   encseq2spm

       ·   eval

       ·   extractfeat

       ·   extractseq

       ·   fastq_sample

       ·   featureindex

       ·   fingerprint

       ·   genomediff

       ·   gff3

       ·   gff3_to_gtf

       ·   gff3validator

       ·   gtf_to_gff3

       ·   hop

       ·   id_to_md5

       ·   inlineseq_add

       ·   inlineseq_split

       ·   interfeat

       ·   loccheck

       ·   ltrclustering

       ·   ltrdigest

       ·   ltrharvest

       ·   matchtool

       ·   matstat

       ·   md5_to_id

       ·   merge

       ·   mergefeat

       ·   mgth

       ·   mkfeatureindex

       ·   mkfmindex

       ·   mmapandread

       ·   orffinder

       ·   packedindex

       ·   prebwt

       ·   readjoiner

       ·   repfind

       ·   scriptfilter

       ·   seed_extend

       ·   select

       ·   seq

       ·   seqfilter

       ·   seqids

       ·   seqmutate

       ·   seqorder

       ·   seqstat

       ·   seqtransform

       ·   seqtranslate

       ·   sequniq

       ·   shredder

       ·   shulengthdist

       ·   simreads

       ·   sketch

       ·   sketch_page

       ·   snpper

       ·   speck

       ·   splicesiteinfo

       ·   splitfasta

       ·   stat

       ·   suffixerator

       ·   tagerator

       ·   tallymer

       ·   tirvish

       ·   uniq

       ·   uniquesub

       ·   wtree

       Set the environment variable GT_MEM_BOOKKEEPING=on to enable memory bookkeeping (e.g.,
       like this: env GT_MEM_BOOKKEEPING=on gt).

       Set the environment variable GT_ENV_OPTIONS=-spacepeak to show a spacepeak after program
       run. Set the environment variable GT_ENV_OPTIONS=-showtime to show processing times for
       some program parts if implemented.

       Set the environment variable GT_SEED to an integer value to supply a seed for the random
       number generator. Can be overridden by the -seed option.

       Combinations are possible. Running the gt binary with GT_ENV_OPTIONS=-help shows all
       possible "environment options".

REPORTING BUGS

       Report bugs to https://github.com/genometools/genometools/issues.