Provided by: emboss_6.6.0+dfsg-7_amd64 bug

NAME

       infoseq - Display basic information about sequences

SYNOPSIS

       infoseq -sequence seqall -columns boolean -delimiter string [-outfile outfile]
               [-html boolean] -only boolean -heading boolean -usa boolean -database boolean
               -name boolean -accession boolean -gi boolean -seqversion boolean -type boolean
               -length boolean -pgc boolean -organism boolean -description boolean

       infoseq -help

DESCRIPTION

       infoseq is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Data retrieval:Sequence data" command group(s).

OPTIONS

   Input section
       -sequence seqall

   Advanced section
       -columns boolean
           Set this option on (Y) to print the sequence information into neat, aligned columns in
           the output file. Alternatively, leave it unset (N), in which case the information
           records will be delimited by a character, which you may specify by using the
           -delimiter option. In other words, if -columns is set on, the -delimiter option is
           overriden. Default value: Y

       -delimiter string
           This string, which is usually a single character only, is used to delimit individual
           records in the text output file. It could be a space character, a tab character, a
           pipe character or any other character or string. Default value: |

   Output section
       -outfile outfile
           If you enter the name of a file here then this program will write the sequence details
           into that file. Default value: stdout

       -html boolean
           Default value: N

       -only boolean
           This is a way of shortening the command line if you only want a few things to be
           displayed. Instead of specifying: '-nohead -noname -noacc -notype -nopgc -nodesc' to
           get only the length output, you can specify '-only -length' Default value: N

       -heading boolean
           Default value: Y

       -usa boolean
           Default value: @(!$(only))

       -database boolean
           Default value: @(!$(only))

       -name boolean
           Default value: @(!$(only))

       -accession boolean
           Default value: @(!$(only))

       -gi boolean
           Default value: N

       -seqversion boolean
           Default value: N

       -type boolean
           Default value: @(!$(only))

       -length boolean
           Default value: @(!$(only))

       -pgc boolean
           Default value: @(!$(only))

       -organism boolean
           Default value: @(!$(only))

       -description boolean
           Default value: @(!$(only))

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       infoseq is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.