Provided by: gatb-core_1.4.1+git20190813.a73b6dd+dfsg-1_amd64
leon - reference free compression for NGS reads
leon options -file (1 arg) : input file (e.g. FASTA/FASTQ for compress or .leon file for decompress) -c (0 arg) : compression -d (0 arg) : decompression -nb-cores (1 arg) : number of cores (default is the available number of cores) [default '0'] -lossless (0 arg) : switch to lossless compression for qualities (default is lossy. lossy has much higher compression rate, and the loss is in fact a gain. lossy is better!) compression options -kmer-size (1 arg) : size of a kmer [default '31'] -abundance (1 arg) : abundance threshold for solid kmers (default inferred) [default ''] -init-iterator (0 arg) : init iterator for ibank mode -seq-only (0 arg) : store dna seq only, header and quals are discarded, will decompress to fasta (same as -noheader -noqual) -noheader (0 arg) : discard header -noqual (0 arg) : discard quality scores
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.