Provided by: emboss_6.6.0+dfsg-7_amd64 bug

NAME

       showdb - Displays information on configured databases

SYNOPSIS

       showdb [-database string] [-html boolean] [-protein boolean] [-nucleic boolean]
              [-sequence boolean] [-feature boolean] [-text boolean] [-taxonomy boolean]
              [-resource boolean] [-assembly boolean] [-obo boolean] [-full boolean]
              [-methods boolean] [-fields boolean] [-defined boolean] [-release boolean]
              -only toggle -heading boolean -type boolean -id boolean -query boolean -all boolean
              -comment boolean [-outfile outfile]

       showdb -help

DESCRIPTION

       showdb is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Data resources" command group(s).

OPTIONS

   Input section
       -database string

   Additional section
       -html boolean
           Default value: N

       -protein boolean
           Default value: Y

       -nucleic boolean
           Default value: Y

       -sequence boolean
           Default value: Y

       -feature boolean
           Default value: Y

       -text boolean
           Default value: Y

       -taxonomy boolean
           Default value: Y

       -resource boolean
           Default value: Y

       -assembly boolean
           Default value: Y

       -obo boolean
           Default value: Y

       -full boolean
           Default value: N

       -methods boolean
           This displays the access methods that can be used on this database, for all, query or
           ID access Default value: $(full)

       -fields boolean
           This displays the search fields that can be used on this database, other than the
           standard 'id' or 'acc' fields. Default value: $(full)

       -defined boolean
           This displays a short name for the file containing the database definition Default
           value: $(full)

       -release boolean
           Default value: $(full)

   Advanced section
       -only toggle
           This is a way of shortening the command line if you only want a few standard columns
           to be displayed. Instead of specifying: '-nohead -notype -noid -noquery -noall' to get
           only the comment output, you can specify '-only -comment' Default value: N

       -heading boolean
           Default value: @(!$(only))

       -type boolean
           Default value: @(!$(only))

       -id boolean
           Default value: @(!$(only))

       -query boolean
           Default value: @(!$(only))

       -all boolean
           Default value: @(!$(only))

       -comment boolean
           Default value: @(!$(only))

   Output section
       -outfile outfile
           Default value: stdout

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       showdb is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.