Provided by: elastix_4.9.0-1_amd64
transformix - apply geometric transform to an image
transformix mandatory-args [optional-args]
transformix applies a transform on an input image and/or generates a deformation field. The transform is specified in the transform-parameter file.
Call transformix from the command line with mandatory arguments: -out output directory -tp transform-parameter file, only 1 Optional extra commands: -in input image to deform -def file containing input-image points the point are transformed according to the specified transform-parameter file use "-def all" to transform all points from the input-image, which effectively generates a deformation field. -jac use "-jac all" to generate an image with the determinant of the spatial Jacobian -jacmat use "-jacmat all" to generate an image with the spatial Jacobian matrix at each voxel -priority set the process priority to high or belownormal (Windows only) -threads set the maximum number of threads of transformix At least one of the options "-in", "-def", "-jac", or "-jacmat" should be given. The transform-parameter file must contain all the information necessary for transformix to run properly. That includes which transform to use, with which parameters, etc. For a usable transform-parameter file, see the output of elastix.
elastix(1) Check the website http://elastix.isi.uu.nl, or mail email@example.com.