Provided by: gbrowse_2.56+dfsg-4_all bug

NAME

       Bio::DB::GFF::Aggregator::reftranscript -- Aggregates references transcripts

SYNOPSIS

       use Bio::DB::GFF::Aggregator;

DESCRIPTION

       Bio::DB::GFF::Aggregator::retranscript was written to make the compound feature,
       "reftranscript" for use with Gbrowse editing software developed outside of the GMOD
       development group.  It can be used to aggregate "reftranscripts" from "refexons", loaded
       as second copy features.  These features, in contrast to "transcripts", are usually
       implemented as features which cannot be edited and serve as starting point references for
       annotations added using Gbrowse for feature visualization.

       Adding features to the compound feature, "reftranscript", can be done by adding to the
       "part_names" call (i.e. "refCDS").

   method
        Title   : method
        Usage   : $aggregator->method
        Function: return the method for the composite object
        Returns : the string "reftranscript"
        Args    : none
        Status  : Public

   part_names
        Title   : part_names
        Usage   : $aggregator->part_names
        Function: return the methods for the sub-parts
        Returns : the list "refexon"
        Args    : none
        Status  : Public

   main_name
        Title   : main_name
        Usage   : $aggregator->main_name
        Function: return the method for the main component
        Returns : the string "reftranscript"
        Args    : none
        Status  : Public

BUGS

       None reported.

SEE ALSO

       Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

       Paul Rudnick <rudnick@ncifcrf.gov>.

       Copyright (c) 2002 Advanced Biomedical Computing Center, SAIC/NCI-Frederick.

       This library is free software; you can redistribute it and/or modify it under the same
       terms as Perl itself.

perl v5.28.0                                2018-10-0Bio::DB::GFF::Aggregator::reftranscript(3pm)