Provided by: libbio-perl-run-perl_1.7.2-4_all bug

NAME

       Bio::DB::SoapEUtilities::LinkAdaptor - Handle for Entrez SOAP LinkSets

SYNOPSIS

        my $fac = Bio::DB::SoapEUtilities->new();
        # run a query, returning a LinkAdaptor
        $fac->elink( -db => 'nucleotide',
                     -dbfrom => 'protein',
                     -id => [qw(828392 790 470338)]);
        my $links = $fac->elink->run( -auto_adapt => 1);
        # get the linked ids corresponding to the submitted ids
        # (may be arrays if multiple crossrefs, or undef if none)
        my @nucids = $links->id_map(828392);
        # iterate over linksets
        while ( my $ls = $links->next_linkset ) {
           my @from_ids = $ls->submitted_ids;
           my @to_ids = $ls->ids;
           my $from_db = $ls->db_from;
           my $to_db = $ls->db_to;
        }

DESCRIPTION

       This adaptor provides an iterator ("next_linkset()") and other convenience functions for
       parsing NCBI Entrez EUtility "elink" SOAP results.

SEE ALSO

       Bio::DB::SoapEUtilities

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
       http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Mark A. Jensen

       Email maj -at- fortinbras -dot- us

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = new Bio::DB::SoapEUtilities::LinkAdaptor();
        Function: Builds a new Bio::DB::SoapEUtilities::LinkAdaptor object
        Returns : an instance of Bio::DB::SoapEUtilities::LinkAdaptor
        Args    :

   next_linkset()
        Title   : next_linkset
        Usage   :
        Function: return the next LinkSet from the attached Result
        Returns :
        Args    :

   id_map()
        Title   : id_map
        Usage   : $to_id = $adaptor->id_map($from_id)
        Function: Return 'to-database' ids corresponding to
                  given specified 'from-database' or
                  submitted ids
        Returns : array of scalars (to-database ids or arrayrefs of ids)
        Args    : array of scalars (from-database ids)