Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser

SYNOPSIS

       See Bio::Matrix::PSM::IO for documentation

DESCRIPTION

       Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST distribution).

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to one of the Bioperl mailing lists.  Your
       participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - James Thompson

       Email tex@biosysadmin.com

APPENDIX

   new
        Title   : new
        Usage   : my $psmIO  =  Bio::Matrix::PSM::IO->new(-format=>'psiblast',
                                                         -file=>$file);
        Function: Associates a file with the appropriate parser
        Throws  :
        Example :
        Args    :
        Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);

   next_psm
        Title   : next_psm
        Usage   : my $psm = $psmIO->next_psm();
        Function: Reads the next PSM from the input file, associated with this object
        Throws  : None
        Returns : Bio::Matrix::PSM::ProtPsm object
        Args    : none