Provided by: libbio-perl-perl_1.7.2-3_all
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
# You wouldn't normally create these manually; # instead they would be produced by Bio::SearchIO::fasta use Bio::Search::Hit::Fasta; my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignment objects corresponding to each hit.
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
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AUTHOR - Aaron Mackey
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ _initialize Function: where the heavy stuff will happen when new is called AUTOLOAD Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL