Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::Search::Result::hmmer3Result - DESCRIPTION of Object

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the object here

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       Please direct usage questions or support issues to the mailing list:

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       of the problem with code and data examples if at all possible.

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AUTHOR - Thomas Sharpton

       Email thomas.sharpton@gmail.com

       Describe contact details here

CONTRIBUTORS

       Additional contributors names and emails here

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = new Bio::Search::Result::hmmer3Result.pm();
        Function: Builds a new Bio::Search::Result::hmmer3Result.pm object
        Returns : an instance of Bio::Search::Result::hmmer3Result.pm
        Args    : -hmm_name => string, name of hmm file
                  -sequence_file => name of the sequence file

   hmm_name
        Title   : hmm_name
        Usage   : $obj->hmm_name($newval)
        Function: Get/Set the value of hmm_name
        Returns : value of hmm_name
        Args    : newvalue (optional)

   sequence_file
        Title   : sequence_file
        Usage   : $obj->sequence_file($newval)
        Function: Get/Set the value of sequence_file
        Returns : value of sequence_file
        Args    : newvalue (optional)

   next_model
        Title   : next_model
        Usage   : my $domain = $result->next_model
        Function: Returns the next domain - this
                  is an alias for next_hit
        Returns : L<Bio::Search::Hit::HitI> object
        Args    : none

   models
        Title   : models
        Usage   : my @domains = $result->models;
        Function: Returns the list of HMM models seen - this
                  is an alias for hits()
        Returns : Array of L<Bio::Search::Hit::HitI> objects
        Args    : none

   rewind
        Title   : rewind
        Usage   : $result->rewind;
        Function: Allow one to reset the Hit iteration to the beginning
                  Since this is an in-memory implementation
        Returns : none
        Args    : none