Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::Seq::SeqFastaSpeedFactory - Rapid creation of Bio::Seq objects through a factory

SYNOPSIS

           use Bio::Seq::SeqFastaSpeedFactory;
           my $factory = Bio::Seq::SeqFastaSpeedFactory->new();
           my $seq = $factory->create( -seq => 'WYRAVLC',
                                       -id  => 'name'     );

DESCRIPTION

       This factory was designed to build Bio::Seq objects as quickly as possible, but is not as
       generic as Bio::Seq::SeqFactory. It can be used to create sequences from non-rich file
       formats. The Bio::SeqIO::fasta sequence parser uses this factory.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Seq::SeqFastaSpeedFactory->new();
        Function: Builds a new Bio::Seq::SeqFastaSpeedFactory object
        Returns : Bio::Seq::SeqFastaSpeedFactory
        Args    : None

   create
        Title   : create
        Usage   : my $seq = $seqbuilder->create(-seq => 'CAGT', -id => 'name');
        Function: Instantiates a new Bio::Seq object, correctly built but very
                  fast, knowing stuff about Bio::PrimarySeq and Bio::Seq
        Returns : A Bio::Seq object
        Args    : Initialization parameters for the sequence object we want:
                     -id
                     -primary_id
                     -display_id
                     -desc
                     -seq
                     -alphabet