Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::SeqIO::raw - raw sequence file input/output stream

SYNOPSIS

       Do not use this module directly.  Use it via the Bio::SeqIO class.

DESCRIPTION

       This object can transform Bio::Seq objects to and from raw flat file databases.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to one of the Bioperl mailing lists.  Your
       participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHORS

         Ewan Birney   E<lt>birney@ebi.ac.ukE<gt>
         Lincoln Stein E<lt>lstein@cshl.orgE<gt>

CONTRIBUTORS

         Jason Stajich E<lt>jason@bioperl.org<gt>

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   next_seq
        Title   : next_seq
        Usage   : $seq = $stream->next_seq()
        Function: returns the next sequence in the stream
        Returns : Bio::Seq object
        Args    :

   write_seq
        Title   : write_seq
        Usage   : $stream->write_seq($seq)
        Function: writes the $seq object into the stream
        Returns : 1 for success and 0 for error
        Args    : Array of Bio::PrimarySeqI objects

   write_qual
        Title   : write_qual
        Usage   : $stream->write_qual($seq)
        Function: writes the $seq object into the stream
        Returns : 1 for success and 0 for error
        Args    : Bio::Seq::Quality object

   variant
        Title   : variant
        Usage   : $format  = $obj->variant();
        Function: Get and set method for the sequence variant.  For raw sequence, this
                  indicates whether to treat the input as multiple sequences (the
                  default) or as a single sequence.

                  Current values accepted are:

                   'single'    single sequence
                   'multiple'  multiple sequences (default)
        Returns : string
        Args    : new value, string