Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::Tools::Coil - parser for Coil output

SYNOPSIS

        use Bio::Tools::Coil
        my $parser = Bio::Tools::Coil->new();
        while( my $sp_feat = $parser->next_result($file) ) {
              #do something
              #eg
              push @sp_feat, $sp_feat;
        }

DESCRIPTION

        Parser for Coil output

FEEDBACK

   Mailing Lists
        User feedback is an integral part of the evolution of this and other
        Bioperl modules. Send your comments and suggestions preferably to
        the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR

        Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Coil
        originally written by Marc Sohrmann (ms2@sanger.ac.uk)
        Written in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org>
       # Please direct questions and support issues to <bioperl-l@bioperl.org>
       #
        Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)

APPENDIX

        The rest of the documentation details each of the object methods.
        Internal methods are usually preceded with a _

   parse_results
        Title   : parse_results
        Usage   : obj->parse_results
        Function: Parses the coil output. Automatically called by
                  next_result() if not yet done.
        Example :
        Returns :

   next_result
        Title   : next_result
        Usage   : while($feat = $coil->next_result($file)) {
                         # do something
                  }
        Function: Returns the next protein feature of the coil output file
        Returns :
        Args    :

   _result
        Title   : _result
        Usage   : $feat = $obj->_result()
        Function: internal
        Example :
        Returns :

   _add_prediction
        Title   : _add_prediction()
        Usage   : $obj->_add_prediction($feat)
        Function: internal
        Example :
        Returns :

   _predictions_parsed
        Title   : _predictions_parsed
        Usage   : $obj->_predictions_parsed
        Function: internal
        Example :
        Returns : TRUE or FALSE

   create_feature
        Title   : create_feature
        Usage   : obj->create_feature(\%feature)
        Function: Internal(not to be used directly)
        Returns :
        Args    :

   _read_fasta
        Title   : _read_fasta
        Usage   : obj->_read_fasta($file)
        Function: Internal(not to be used directly)
        Returns :
        Args    :