Provided by: libbio-perl-perl_1.7.2-3_all bug

NAME

       Bio::Tools::FootPrinter - write sequence features in FootPrinter format

SYNOPSIS

           use Bio::Tools::FootPrinter;

           my $tool = Bio::Tools::FootPrinter->new(-file=>"footprinter.out");

           while (my $result = $tool->next_feature){
             foreach my $feat($result->sub_SeqFeature){
               print $result->seq_id."\t".$feat->start."\t".$feat->end."\t".$feat->seq->seq."\n";
             }
           }

DESCRIPTION

       This module writes sequence features in FootPrinter format.  See
       <http://bio.cs.washington.edu/software.html> for more details.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably to the Bioperl mailing list.  Your participation
       is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
       resolution. Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Shawn Hoon

       Email shawnh@fugu-sg.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Tools::FootPrinter->new();
        Function: Builds a new Bio::Tools::FootPrinter object
        Returns : Bio::Tools::FootPrinter
        Args    : -fh/-file => $val, # for initing input, see Bio::Root::IO

   next_feature
        Title   : next_feature
        Usage   : my $r = $footprint->next_feature
        Function: Get the next feature from parser data
        Returns : L<Bio::SeqFeature::Generic>
        Args    : none

   _add_feature
        Title   : _add_feature
        Usage   : $footprint->_add_feature($feat)
        Function: Add feature to array
        Returns : none
        Args    : none

   _parse_predictions
        Title   : _parse_predictions
        Usage   : my $r = $footprint->_parse_predictions
        Function: do the parsing
        Returns : none
        Args    : none

   _predictions_parsed
        Title   : _predictions_parsed
        Usage   : $footprint->_predictions_parsed(1)
        Function: Get/Set for whether predictions parsed
        Returns : 1/0
        Args    : none

   _parse
        Title   : _parse
        Usage   : $footprint->_parse($name,$seq,$pattern)
        Function: do the actual parsing
        Returns : L<Bio::SeqFeature::Generic>
        Args    : none