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NAME

       xsh_util_physmod - Generate physical model products

SYNOPSIS

       esorex xsh_util_physmod [OPTIONS] FILE.sof

DESCRIPTION

       This  recipe  generates  the theoretical and the spectral format tables.  and possibly the
       model based wave map.

       The sof file contains the names of the input FITS file tagged with XSH_MOD_CFG_TAB_arm.

       tagged with ARC_LINE_LIST_arm.

       This recipe has the following products: Model order traces for nine pinholes (PRO  CATG  =
       THEO_TAB_MULT_arm)  Model  order  traces  for  nine pinholes (PRO CATG = THEO_TAB_IFU_arm)
       Model order traces for central pinhole (PRO  CATG  =  THEO_TAB_SING_arm)  Spectral  format
       table  (PRO  CATG = SPECTRAL_FORMAT_TAB_arm) Wave map image (PRO CATG = WAVE_MAP_arm) Slit
       map image (PRO CATG = SLIT_MAP_arm)

OPTIONS

       --keep-temp <str>
              If ´no´, temporary files are deleted. (str; default: ´no´). The full name  of  this
              option for the EsoRex configuration file is xsh.xsh_util_physmod.keep-temp [default
              = no].

       --debug-level <str>
              Additional xshooter debug level. One  of  ´none´,  ´low´,  ´medium´,  ´high´  (str;
              default: ´none´). The full name of this option for the EsoRex configuration file is
              xsh.xsh_util_physmod.debug-level [default = none].

       --time-stamp <bool>
              Add timestamp to product file name. (bool; default: False). The full name  of  this
              option   for  the  EsoRex  configuration  file  is  xsh.xsh_util_physmod.time-stamp
              [default = False].

       --decode-bp <int>
              Integer representation of the bits to be considered bad when decoding the bad pixel
              mask  pixel  values.    Most frequent codes relevant for the user:   0: good pixel,
              8: pick-up noise,   16: cosmic-ray  removed,    32:  cosmic-ray  unremoved,    128:
              calibration  file  defect, 256: hot pixel,   512: dark pixel,   4096: A/D converted
              saturation, 32768: non linear pixel,   1048576: extrapolated flux in NIR,  4194304:
              Interpolated  flux  during extraction. (int; default: 2144337919). The full name of
              this option for the EsoRex  configuration  file  is  xsh.xsh_util_physmod.decode-bp
              [default = 2144337919].

       --binx <int>
              X  binning   (int;  default:  1).  The  full  name  of  this  option for the EsoRex
              configuration file is xsh.xsh_model.binx [default = 1].

       --biny <int>
              X binning  (int; default:  1).  The  full  name  of  this  option  for  the  EsoRex
              configuration file is xsh.xsh_model.biny [default = 1].

       --spectral-format-tab <bool>
              Generate  spectral  format  table    (bool;  default: False). The full name of this
              option for  the  EsoRex  configuration  file  is  xsh.xsh_model.spectral_format_tab
              [default = False].

       --wavemap <bool>
              Generate slit and wave maps (time consuming)  (bool; default: False). The full name
              of this option for the EsoRex configuration file is xsh.xsh_model.wavemap  [default
              = False].

       Note  that  it  is possible to create a configuration file containing these options, along
       with suitable default values. Please refer to the details provided by the 'esorex  --help'
       command.

SEE ALSO

       The  full  documentation  for the xshoo pipeline can be downloaded as a PDF file using the
       following URL:

              ftp://ftp.eso.org/pub/dfs/pipelines/xshoo/xshoo-pipeline-manual-12.1.pdf

       An  overview  over  the  existing  ESO  pipelines  can  be   found   on   the   web   page
       https://www.eso.org/sci/software/pipelines/.

       Basic documentation about the EsoRex program can be found at the esorex (1) man page.

       It  is  possible  to  call  the  pipelines  from python using the python-cpl package.  See
       https://packages.python.org/python-cpl/index.html for further information.

       The  other  recipes  of  the  xshoo   pipeline   are   xsh_2dmap(7),   xsh_cfg_recover(7),
       xsh_flexcomp(7),     xsh_geom_ifu(7),    xsh_lingain(7),    xsh_mbias(7),    xsh_mdark(7),
       xsh_mflat(7),       xsh_orderpos(7),        xsh_predict(7),        xsh_respon_slit_nod(7),
       xsh_respon_slit_offset(7),       xsh_respon_slit_stare(7),       xsh_scired_ifu_offset(7),
       xsh_scired_ifu_offset_drl(7),    xsh_scired_ifu_stare(7),     xsh_scired_ifu_stare_drl(7),
       xsh_scired_slit_nod(7),        xsh_scired_slit_offset(7),        xsh_scired_slit_stare(7),
       xsh_wavecal(7)

VERSION

       xsh_util_physmod 3.2.0

AUTHOR

       Andrea Modigliani <amodigli@eso.org>

BUG REPORTS

       Please report any problems to amodigli@eso.org. Alternatively, you may send  a  report  to
       the ESO User Support Department <usd-help@eso.org>.

LICENSE

       This  file  is  part  of  the  X-shooter  Instrument  Pipeline Copyright (C) 2006 European
       Southern Observatory

       This program is free software; you can redistribute it and/or modify it under the terms of
       the  GNU  General  Public  License  as  published  by the Free Software Foundation; either
       version 2 of the License, or (at your option) any later version.

       This program is distributed in the hope that it will be useful, but WITHOUT ANY  WARRANTY;
       without  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
       See the GNU General Public License for more details.

       You should have received a copy of the GNU General Public License along with this program;
       if  not,  write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston,
       MA  02111-1307  USA