NAME

       PicardCommandLine - manipulate SAM and BAM files

SYNOPSIS

       PicardCommandLine COMMAND [OPTION]...

DESCRIPTION

       SAM  (Sequence  Alignment/Map)  format  is  a  generic format for storing large nucleotide
       sequence alignments.

       Picard Tools includes lots of utilities to manipulate SAM and BAM files.  The  whole  list
       with a short description can be obtained by running PicardCommandLine -h.

       Description  of  the  options  and  parameters  of all commands can be obtained by running
       PicardCommandLine COMMAND -h.

REPORTING BUGS

       samtools-devel@lists.sourceforge.net

COPYRIGHT

       Copyright 2010 The Broad Institute

SEE ALSO

       http://broadinstitute.github.io/picard/