NAME

       bamchecksort - split BAM file into a set of BAM files

SYNOPSIS

       bamchecksort [options]

DESCRIPTION

       bamchecksort  reads  a  BAM  file via standard input and creates a set of output BAM files
       containing the alignments in the input. For query name sorted files the  program  strictly
       checks  the  order used by the bamsort program, i.e. it requires reads marked as read 1 to
       appear before such marked as read 2 for lines with equal names.

       The following key=value pairs can be given:

       verbose=<1>: Valid values are

       1:     print progress report on standard error

       0:     do not print progress report

AUTHOR

       Written by German Tischler.

REPORTING BUGS

       Report bugs to <tischler@mpi-cbg.de>

COPYRIGHT

       Copyright © 2009-2013 German Tischler,  ©  2011-2013  Genome  Research  Limited.   License
       GPLv3+: GNU GPL version 3 <http://gnu.org/licenses/gpl.html>
       This  is free software: you are free to change and redistribute it.  There is NO WARRANTY,
       to the extent permitted by law.