Provided by: cmtk_3.3.1p1+dfsg-2build1_amd64 bug


       stream_pixels - Stream pixel data from one or more images to Standard Output.


       stream_pixels ImagePaths


       This  tool  reads  one  or  more  images and writes all their pixels to standard output in
       binary  form.  Optionally,  each  image  can  be  reoriented  to  a  specified  anatomical
       orientation  and/or  converted  to  a different data type. This is useful for piping image
       data through a pipeline, e.g., the Camino DTI toolkit.


   Global Toolkit Options (these are shared by all CMTK tools)
            Write list of basic command line options to standard output.

            Write complete list of basic and advanced command line options to standard output.

            Write list of command line options to standard output in MediaWiki markup.

            Write man page source in 'nroff' markup to standard output.

            Write toolkit version to standard output.

            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --reorient <string>
            Reorient all images to anatomy-based standard  orientation,  e.g.,  RAS  or  LPS  for
            axial. Default: no reorientation.  [Default: NONE]

            Change endianness. Default: native endianness.

            Convert  data  to new scalar type. Default: no conversion.  Supported values: "char",
            "byte", "short", "ushort", "int", "uint",  "float",  "double",  or  use  one  of  the

                 8 bits, signed integer

                 8 bits, unsigned integer

                 16 bits, signed integer

                 16 bits, unsigned integer

                 32 bits, signed integer

                 32 bits, unsigned integer

                 32-bits, single-precision floating point

                 64 bits, double-precision floating point


       Torsten  Rohlfing,  with  contributions  from  Michael  P. Hasak, Greg Jefferis, Calvin R.
       Maurer, Daniel B. Russakoff, and Yaroslav Halchenko



       Report bugs at


       CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on
       Alcohol  and  Neurodevelopment  in Adolescence (N-CANDA): Data Integration Component. From
       April 2009 through September 2011, CMTK development and maintenance was supported  by  the
       NIBIB under Grant EB008381.