Provided by: cnvkit_0.9.6-3_amd64
NAME
cnvkit_fix - Combine target and antitarget coverages and correct for biases. Adjust raw coverage data according to the given reference, correct potential biases and re-center.
DESCRIPTION
usage: cnvkit fix [-h] [--no-gc] [--no-edge] [--no-rmask] [-i SAMPLE_ID] [-o FILENAME] target antitarget reference positional arguments: target Target coverage file (.targetcoverage.cnn). antitarget Antitarget coverage file (.antitargetcoverage.cnn). reference Reference coverage (.cnn). optional arguments: -h, --help show this help message and exit --no-gc Skip GC correction. --no-edge Skip edge-effect correction. --no-rmask Skip RepeatMasker correction. -i SAMPLE_ID, --sample-id SAMPLE_ID Sample ID for target/antitarget files. Otherwise inferred from file names. -o FILENAME, --output FILENAME Output file name.