Provided by: cnvkit_0.9.6-3_amd64
cnvkit_sex - Guess samples' sex from the relative coverage of chromosomes X and Y.
usage: cnvkit sex [-h] [-y] [-o FILENAME] filenames [filenames ...] positional arguments: filenames Copy number or copy ratio files (*.cnn, *.cnr). optional arguments: -h, --help show this help message and exit -y, --male-reference, --haploid-x-reference Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have -1 chrX). -o FILENAME, --output FILENAME Output table file name.