Provided by: libgenome-model-tools-music-perl_0.04-4_all
genome music plot mutation-relation
genome music plot mutation-relation - Makes plots for results from the mutation-relation tool
This document describes genome music plot mutation-relation version 0.04 (2018-07-05 at 09:17:13)
genome music plot mutation-relation --input-matrix=? --output-pdf=? [--skip-zero-mut-samples] [--genes-to-plot=?] [--plot-genes-in-order-listed]
input-matrix String A gene/sample matrix generated by the mutation-relation tool output-pdf String An output pdf file to draw the plot to
skip-zero-mut-samples Boolean Don't plot samples that have no mutations on any gene being plotted Default value 'true' if not specified noskip-zero-mut-samples Boolean Make skip-zero-mut-samples 'false' genes-to-plot String Comma-separated list of genes to plot (example: DNMT3A,NPM1) plot-genes-in-order-listed Boolean Plot the genes in the order that they're listed. Default is to plot them in descending order by number of mutations Default value 'false' (--noplot-genes-in-order-listed) if not specified noplot-genes-in-order-listed Boolean Make plot-genes-in-order-listed 'false'
Given a matrix generated using "music mutation-relation --mutation-matrix-file", this tool will generate a plot that highlights mutual exclusivity or concurrence between the mutation status of a predefined set of genes.