NAME

       gffutils-cli_sanitize - Sanitize a GFF file

DESCRIPTION

       usage: gffutils-cli sanitize [-h] [--in-memory] [--in-place] filename

              Sanitize a GFF file. Might get merged with clean feature later.

              Cleans and adds useful annotations to a GFF file:

              - Ensures that start > end in all entries - Adds an entry id (eid) to each entry to
              make files grep-able

              Outputs result to stdout unless asked to sanitize in place.

   positional arguments:
       filename
              GFF or GTF file to use (or GFF database.)

   optional arguments:
       -h, --help
              show this help message and exit

       --in-memory
              Load GFF into memory for processing. (default: True)

       --in-place
              Sanitize file in-place: overwrites current file with sanitized  version.  (default:
              False)