Provided by: libgo-perl_0.15-7_all
go-dag-summary - summarises an ontology
Summarises an ontology
-e ERRFILE writes parse errors in XML - defaults to STDERR (there should be no parse errors in well formed files) -p FORMAT determines which parser to use; if left unspecified, will make a guess based on file suffix. See below for formats -use_cache If this switch is specified, then caching mode is turned on. With caching mode, the first time you parse a file, then an additional file will be exported in a special format that is fast to parse. This file will have the same filename as the original file, except it will have the ".cache" suffix. The next time you parse the file, this program will automatically check for the existence of the ".cache" file. If it exists, and is more recent than the file you specified, this is parsed instead. If it does not exist, it is rebuilt.
One row per ontology Each row has the following columns input filename total no of terms total no of relationships total no of paths avg no of paths per term (p/t) maximum no of paths for any term ID of term with maximum no of paths NOTE: obsolete terms are not included DOCUMENTATION <http://www.godatabase.org/dev> SEE ALSO <http://www.fruitfly.org/~cjm/obol/doc/go-complexity.html>