Provided by: genometools_1.6.1+ds-2_amd64 bug


       gt-tallymer-mkindex - Count and index k-mers in the given enhanced suffix array for a
       fixed value of k.


       gt tallymer mkindex [options] -esa suffixerator-index [options]


       -esa [string]
           specify suffixerator-index (mandatory option) (default: undefined)

       -mersize [value]
           Specify the mer size. (default: 20)

       -minocc [value]
           Specify the minimum occurrence number for the mers to output/index (default: 0)

       -maxocc [value]
           Specify the maximum occurrence number for the mers to output/index (default: 0)

       -pl [value]
           specify prefix length for bucket boundary construction recommendation: use without
           argument; then a reasonable prefix length is automatically determined (default: 0)

       -indexname [string]
           store the mers specified by options -maxocc and -minocc in an index (default:

       -counts [yes|no]
           store counts of the mers (default: no)

       -scan [yes|no]
           read enhanced suffix array sequentially instead of mapping it to memory (default: no)

       -v [yes|no]
           be verbose (default: no)

           display help and exit

           display version information and exit


       Report bugs to <>.