NAME

       hmmc2 - example client for the HMMER daemon

SYNOPSIS

       hmmc2 [options]

DESCRIPTION

       Hmmc2  is  a  text  client for the hmmpgmd or hmmpgmd_shard daemons.  When run, it opens a
       connection to a daemon  at  the  specified  IP  address  and  port,  and  then  enters  an
       interactive loop waiting for the user to input commands to be sent to the daemon.  See the
       User's Guide for the HMMER Daemon for a discussion of hmmpgmd's command format.

OPTIONS

       -i <IP address>
              Specify the IP address of the daemon that hmmc2 should  connect  to.   Defaults  to
              127.0.0.1 if not provided

       -p <port number>
              Specify  the port number that the daemon is listening on.  Defaults to 51371 if not
              provided

       -S     Print the scores of any hits found during searches.

       -A     Print the alignment of any hits found during searches.  This is a superset  of  the
              "-S" flag, so providing both is redundant.

SEE ALSO

       See  hmmer(1)  for  a  master  man  page  with  a list of all the individual man pages for
       programs in the HMMER package.

       For complete documentation, see the user guide that  came  with  your  HMMER  distribution
       (Userguide.pdf); or see the HMMER web page (http://hmmer.org/).

COPYRIGHT

       Copyright (C) 2019 Howard Hughes Medical Institute.
       Freely distributed under the BSD open source license.

       For  additional  information  on copyright and licensing, see the file called COPYRIGHT in
       your HMMER source distribution, or see the HMMER web page (http://hmmer.org/).

AUTHOR

       http://eddylab.org