NAME

       iva_qc_make_db - make a database as input for iva_qc

DESCRIPTION

       usage: iva_qc_make_db [options] <output directory>

   positional arguments:
       Directory_name
              Name of output directory

   optional arguments:
       -h, --help
              show this help message and exit

       --add_to_ref Filename
              Filename  of  Genbank  IDs  or  GI  numbers  to  be  added  to database. Format is:
              whitespace separated list of GI numbers on each line. One line defines  one  genome
              (e.g. flu is 8 segments, so put 8 GI numbers on one line for one flu reference)

       --skip_viruses
              Do  not  run kraken-build --download-library viruses when building the database. If
              this option used, then --add_to_ref must also be used

       --threads INT
              Number of threads to use [1]

       --minimizer_len INT
              Number to pass to kraken-build minimizer_len option [13]

       --max_db_size INT
              Number to pass to kraken-build max_db_size option [3]

       --verbose
              Be verbose

       --version
              show program's version number and exit