Provided by: kma_1.2.21-1_amd64
kma_index - creates the databases needed to run KMA, from a list of fasta files given
kma_index creates the databases needed to run KMA, from a list of fasta files given.
-i Input/query file name (STDIN: "--") None -o Output file Input/template file -batch Batch input file -deCon File with contamination (STDIN: "--") None/False -batchD Batch decon file -t_db Add to existing DB None/False -k Kmersize 16 -k_t Kmersize for template identification 16 -k_i Kmersize for indexing 16 -ML Minimum length of templates kmersize (16) -CS Start Chain size 1 M -ME Mega DB False -NI Do not dump *.index.b False -Sparse Make Sparse DB ('-' for no prefix) None/False -ht Homology template 1.0 -hq Homology query 1.0 -and Both homolgy thresholds has to be reached or -v Version -h Shows this help message
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.