Provided by: kmc_2.3+dfsg-7build1_amd64
kmc_tools-counters_subtract - calculate counters subtraction of two KMC databases
kmc_tools counters_subtract <input1 [input1_params]> <input2 [input2_params]> <output [output_params]>
The output database will contain only k-mers that are present in the first input set and have counters higher than the appropriate k-mers in the second set. For each k-mer the counter is equal to the difference between the counter in the first set and the counter in the second set.
For each input there are additional parameters: -ci<value> exclude k-mers occurring less than <value> times -cx<value> exclude k-mers occurring more of than <value> times For output there are additional parameters: -ci<value> exclude k-mers occurring less than <value> times -cx<value> exclude k-mers occurring more of than <value> times -cs<value> maximal value of a counter
kmc - k28 file1.fastq kmers1 tmp kmc - k28 file2.fastq kmers2 tmp kmc_tools counters_subtract kmers1 kmers2 kmers1_kmers2_counters_subtract
KMC was originally written by: · Sebastian Deorowicz (firstname.lastname@example.org) · Marek Kokot · Szymon Grabowski · Agnieszka Debudaj-Grabysz
KMC is a free software distributed under GNU GPL3 licence for academic, research, and commercial use. KMC_TOOLS-COUNTERS_SUBTRACT(1)