NAME

       mia-3dlandmarks-transform - Transform 3D landmark positions.

SYNOPSIS

       mia-3dlandmarks-transform -i <in-file> -o <out-file> -t <transformation> [options]

DESCRIPTION

       mia-3dlandmarks-transform  Transform the locations of the landmarks by means of a given 3D
       transformation. Note, landmark transformations do the inverse of an  image  transformation
       (in a manner of speaking), i.e. given a transformation V(x) in an image transformation the
       pixel intensity at x is set to the original intensity at V(x), while a landmark  at  x  is
       moved to V(x).

OPTIONS

              -i --in-file=(input, required); io
                     input landmark set
                      For supported file types see PLUGINS:3dlandmarklist/io

              -o --out-file=(output, required); io
                     output landmark set
                      For supported file types see PLUGINS:3dlandmarklist/io

              -t --transformation=(input, required); io
                     transformation file
                      For supported file types see PLUGINS:3dtransform/io

   Help & Info
              -V --verbose=warning
                     verbosity  of  output,  print messages of given level and higher priorities.
                     Supported priorities starting at lowest level are:

                        trace ‐ Function call trace
                        debug ‐ Debug output
                        info ‐ Low level messages
                        message ‐ Normal messages
                        warning ‐ Warnings
                        fail ‐ Report test failures
                        error ‐ Report errors
                        fatal ‐ Report only fatal errors

                 --copyright
                     print copyright information

              -h --help
                     print this help

              -? --usage
                     print a short help

                 --version
                     print the version number and exit

   Processing
                 --threads=-1
                     Maxiumum number of threads to use for processing,This number should be lower
                     or  equal  to  the  number  of  logical processor cores in the machine. (-1:
                     automatic estimation).

PLUGINS: 3dlandmarklist/io

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       lmx       IO plugin to load and store 3D landmark lists

                     Recognized file extensions:  .lmx

PLUGINS: 3dtransform/io

       bbs       Binary (non-portable) serialized IO of 3D transformations

                     Recognized file extensions:  .bbs

       datapool  Virtual IO to and from the internal data pool

                     Recognized file extensions:  .@

       vista     Vista storage of 3D transformations

                     Recognized file extensions:  .v, .v3dt

       xml       XML serialized IO of 3D transformations

                     Recognized file extensions:  .x3dt

EXAMPLE

       Transform the landmarks given in input.lmx  by  applyning  the  transfromation  stored  in
       trans.v and store the result in output.lmx

       mia-3dlandmarks-transform -i input.lmx -t trans.v  -o output.lmx

AUTHOR(s)

       Gert Wollny

COPYRIGHT

       This  software  is  Copyright  (c) 1999‐2015 Leipzig, Germany and Madrid, Spain.  It comes
       with  ABSOLUTELY  NO WARRANTY  and  you  may redistribute it under the terms  of  the  GNU
       GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
       option '--copyright'.