NAME

       obipr2 - description of obipr2

       obipr2:  converts  and  optionally  download the PR2 database into an ecoPCR database. The
       formated database include the taxonomy as defined by the PR2 authors.

       WARNING:
          Take care that the numeric taxids associated to the sequences are specific to this  PR2
          database  and  not compatible with the NCBI taxids.  The taxids present in a version of
          the PR2 database are are just valid for this version of the database and not compatible
          with the taxids used in another version downloaded at an other time.

       Example:

                 > obipr2

          This  command  downloads  and  formats  the latest version of the PR2 database from the
          official
          `PR2 web site<http://ssu-rrna.org/pr2/>`_
          .

OBIPR2 SPECIFIC OPTIONS

       --local=<DIRNAME>
                 Specify you have already downloaded a copy of the PR2 database  located  at  the
                 following URL http://5.196.17.195/pr2/download/entire_database

              Example:

                     > obipr2 --local=PR2Dir

                 This format PR2 database pre-downloaded in the PR2Dir directory.

COMMON OPTIONS

       -h, --help
              Shows this help message and exits.

       --DEBUG
              Sets logging in debug mode.

AUTHOR

       The OBITools Development Team - LECA

COPYRIGHT

       2019 - 2015, OBITool Development Team

 1.02 12                                   Jan 28, 2019                                 OBIPR2(1)