NAME

       pxclsq - Cleans alignments by removing positions with too much ambiguous data.

SYNOPSIS

       pxclsq [OPTION]...

DESCRIPTION

       Cleans  alignments  by  removing  positions  with too much ambiguous data.  This will take
       fasta, fastq, phylip, and nexus inputs.  Results are written in fasta format.

       -s, --seqf=FILE
              input sequence file, stdin otherwise

       -o, --outf=FILE
              output fasta file, stout otherwise

       -p, --prop=DOUBLE
              proportion required to be present, default=0.5

       -a, --aminoacid
              force interpret as protein (if inference fails)

       -v, --verbose
              more verbose output (i.e. if entire seqs are removed)

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

REPORTING BUGS

       Report   bugs   to:   <https://github.com/FePhyFoFum/phyx/issues>    phyx    home    page:
       <https://github.com/FePhyFoFum/phyx>

AUTHOR

       This  manpage was written by Andreas Tille for the Debian distribution and can be used for
       any other usage of the program.