NAME

       pxstrec - This will conduct state reconstruction analyses.

SYNOPSIS

       pxstrec [OPTION]... [FILE]...

DESCRIPTION

       This will conduct state reconstruction analyses.

       -d, --dataf=FILE
              input data file

       -w, --datawide
              data is in wide format so (001 instead of 2)

       -z, --dataz
              data is in probability format (0,1,0,0)

       -t, --treef=FILE
              input tree file

       -c, --conf=FILE
              configuration file

       -o, --outanc=FILE
              output file for ancestral calc

       -n, --outstnum=FILE output file for stochastic mapping number

       -a, --outstnumany=FILE output file for stochastic mapping number any

       -m, --outsttim=FILE output file for stochastic mapping duration

       -p, --periods=NUMS
              comma separated times

       -l, --logf=FILE
              log file, stout otherwise

       -h, --help
              display this help and exit

       -V, --version
              display version and exit

REPORTING BUGS

       Report    bugs    to:    <https://github.com/FePhyFoFum/phyx/issues>   phyx   home   page:
       <https://github.com/FePhyFoFum/phyx>

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.