NAME

       reapr-gapresize - calculates gap sizes based on read mapping

SYNOPSIS

       reapr gapresize [options] <assembly.fasta> <in.bam> <avg-fragment-length>
       <max-fragment-length> <outfileprefix>

OPTIONS

       -g <int>
           Only consider gaps of at least this length [1]

SEE ALSO

       reapr(1)

                                                                               REAPR-GAPRESIZE(1)