NAME

       sga-aligm - align reads to contigs

SYNOPSIS

       sga-align [options] <contigs file> <input files>

DESCRIPTION

       The  major  goal  of  SGA  is  to  be  very memory efficient, which is achieved by using a
       compressed representation of DNA sequence reads.

       SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph
       formulation  of  assembly  and  uses the FM-index/Burrows-Wheeler transform to efficiently
       find overlaps between sequence reads.

OPTIONS

       --name=STR
              Use STR as the basename for the output files.

       -t,--threads=N
              Use N threads when running bwa.

AUTHOR

       This manpage was written by Andreas Tille for the Debian distribution and can be used  for
       any other usage of the program.