Provided by: libbio-perl-perl_1.7.6-3_all bug

NAME

       Bio::Factory::SeqAnalysisParserFactoryI - interface describing objects capable
                     of creating SeqAnalysisParserI compliant parsers

SYNOPSIS

           # initialize an object implementing this interface, e.g.
           $factory = Bio::Factory::SeqAnalysisParserFactory->new();
           # obtain a parser object
           $parser = $factory->get_parser(-input=>$inputobj,
                                          -params=>[@params],
                                          -method => $method);
           # $parser is an object implementing Bio::SeqAnalysisParserI
           # annotate sequence with features produced by parser
           while(my $feat = $parser->next_feature()) {
               $seq->add_SeqFeature($feat);
           }

DESCRIPTION

       This is an interface for factory classes capable of instantiating SeqAnalysisParserI
       implementing parsers.

       The concept behind the interface is a generic analysis result parsing in high-throughput
       automated sequence annotation pipelines. See Bio::SeqAnalysisParserI for more
       documentation of this concept.

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send
       your comments and suggestions preferably
        to one of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will
       be able look at the problem and quickly address it. Please include a thorough description
       of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their
       resolution.  Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Hilmar Lapp, Jason Stajich

       Email Hilmar Lapp <hlapp@gmx.net>, Jason Stajich <jason@bioperl.org>

APPENDIX

       The rest of the documentation details each of the object methods. Internal methods are
       usually preceded with a _

   get_parser
        Title   : get_parser
        Usage   : $factory->get_parser(-input=>$inputobj,
                                       [ -params=>[@params] ],
                                       -method => $method)
        Function: Creates and returns a parser object for the given input and method.
                  The type of input which is suitable depends on the implementation,
                  but a good-style implementation should allow both file names and
                  streams (filehandles).

                  A particular implementation may not be able to create a parser for
                  the requested method. In this case it shall return undef.

                  Parameters (-params argument) are passed on to the parser object
                  and therefore are specific to the parser to be created. An
                  implementation of this interface should make this argument optional.
        Example :
        Returns : A Bio::SeqAnalysisParserI implementing object.
        Args    : B<input>  - object/file where analysis results are coming from,
                  B<params> - parameter to use when parsing/running analysis
                  B<method> - method of analysis

perl v5.30.0                                2019-11-2Bio::Factory::SeqAnalysisParserFactoryI(3pm)