Provided by: libbio-perl-perl_1.7.2-3_all bug


       Bio::PopGen::IndividualI - An individual who has Genotype or Sequence Results


         # Get a Bio::PopGen::IndividualI somehow
         # test if it has alleles/genotypes for a given marker
         if( $ind->has_marker($markername) ) {
         # get the unique id
         print $ind->unique_id, "\n";

         # get the number of results (genotypes)
         print $ind->num_results;


       Describe the interface here


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AUTHOR - Jason Stajich



       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : unique_id
        Usage   : my $id = $individual->unique_id
        Function: Unique Identifier
        Returns : string representing unique identifier
        Args    : string

        Title   : num_genotypes
        Usage   : my $count = $person->num_results;
        Function: returns the count of the number of Results for a person
        Returns : integer
        Args    : none

        Title   : annotation
        Usage   : my $annotation_collection = $ind->annotation;
        Function: Get/set a Bio::AnnotationCollectionI for this individual
        Returns : Bio::AnnotationCollectionI object
        Args    : [optional set] Bio::AnnotationCollectionI object

        Title   : get_Genotypes
        Usage   : my @genotypes = $ind->get_Genotypes(-marker => $markername);
        Function: Get the genotypes for an individual, based on a criteria
        Returns : Array of genotypes
        Args    : either none (return all genotypes) or
                  -marker => name of marker to return (exact match, case matters)

        Title   : has_Marker
        Usage   : if( $ind->has_Marker($name) ) {}
        Function: Boolean test to see if an Individual has a genotype
                  for a specific marker
        Returns : Boolean (true or false)
        Args    : String representing a marker name

        Title   : get_marker_names
        Usage   : my @names = $individual->get_marker_names;
        Function: Returns the list of known marker names
        Returns : List of strings
        Args    : none