Provided by: libbio-perl-perl_1.7.6-3_all bug


       Bio::SearchIO::IteratedSearchResultEventBuilder - Event Handler for SearchIO events.


       # Do not use this object directly, this object is part of the SearchIO # event based
       parsing system.


       This object handles Search Events generated by the SearchIO classes and build appropriate
       Bio::Search::* objects from them.


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AUTHOR - Steve Chervitz



       Parts of code based on SearchResultEventBuilder by Jason Stajich

       Sendu Bala,


       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _

        Title   : new
        Usage   : my $obj = Bio::SearchIO::IteratedSearchResultEventBuilder->new();
        Function: Builds a new Bio::SearchIO::IteratedSearchResultEventBuilder object
        Returns : Bio::SearchIO::IteratedSearchResultEventBuilder
        Args    : -hsp_factory    => Bio::Factory::ObjectFactoryI
                  -hit_factory    => Bio::Factory::ObjectFactoryI
                  -result_factory => Bio::Factory::ObjectFactoryI
                  -iteration_factory => Bio::Factory::ObjectFactoryI
                  -inclusion_threshold => e-value threshold for inclusion in the
                                          PSI-BLAST score matrix model (blastpgp)
                  -signif      => float or scientific notation number to be used
                                  as a P- or Expect value cutoff
                  -score       => integer or scientific notation number to be used
                                  as a blast score value cutoff
                  -bits        => integer or scientific notation number to be used
                                  as a bit score value cutoff
                  -hit_filter  => reference to a function to be used for
                                  filtering hits based on arbitrary criteria.

       See Bio::SearchIO::SearchResultEventBuilder for more information

        Title   : will_handle
        Usage   : if( $handler->will_handle($event_type) ) { ... }
        Function: Tests if this event builder knows how to process a specific event
        Returns : boolean
        Args    : event type name

   SAX methods
        Title   : start_result
        Usage   : $handler->start_result($resulttype)
        Function: Begins a result event cycle
        Returns : none
        Args    : Type of Report

        Title   : start_iteration
        Usage   : $handler->start_iteration()
        Function: Starts an Iteration event cycle
        Returns : none
        Args    : type of event and associated hashref

        Title   : end_iteration
        Usage   : $handler->end_iteration()
        Function: Ends an Iteration event cycle
        Returns : Bio::Search::Iteration object
        Args    : type of event and associated hashref

perl v5.30.0                                2Bio::SearchIO::IteratedSearchResultEventBuilder(3pm)