Provided by: libbio-searchio-hmmer-perl_1.7.3-2_all bug


       Bio::SearchIO::hmmer - A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)


           # do not use this class directly it is available through Bio::SearchIO
           use Bio::SearchIO;
           my $in = Bio::SearchIO->new(-format => 'hmmer',
                                      -file   => 't/data/L77119.hmmer');
           while( my $result = $in->next_result ) {
               # this is a Bio::Search::Result::HMMERResult object
               print $result->query_name(), " for HMM ", $result->hmm_name(), "\n";
               while( my $hit = $result->next_hit ) {
                   print $hit->name(), "\n";
                   while( my $hsp = $hit->next_hsp ) {
                       print "length is ", $hsp->length(), "\n";


       This object implements a parser for HMMER output. It works with both HMMER2 and HMMER3


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AUTHOR - Kai Blin



       The rest of the documentation details each of the object methods.  Internal methods are
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