Provided by: libbio-perl-perl_1.7.6-3_all bug


       Bio::SeqIO::locuslink - LocusLink input/output stream


          # don't instantiate directly - instead do
          my $seqio = Bio::SeqIO->new(-format => "locuslink", -file => \STDIN);


       This module parses LocusLink into Bio::SeqI objects with rich annotation, but no sequence.

       The input file has to be in the LL_tmpl format - the tabular format will not work.

       The way the current implementation populates the object is rather a draft work than a
       finished work of art. Note that at this stage the LocusLink entries cannot be round-
       tripped, because the parser loses certain information. For instance, most of the
       alternative transcript descriptions are not retained. The parser also misses any element
       that deals with visual representation (e.g., 'button') except for the URLs. Almost all of
       the pieces of the annotation are kept in a Bio::Annotation::Collection object, see
       Bio::Annotation::Collection for more information.


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AUTHOR - Keith Ching

       Email kching at


       Hilmar Lapp, hlapp at


       The rest of the documentation details each of the object methods.  Internal methods are
       usually preceded with a _