NAME

       Bio::Tradis::RemoveTags - Remove tags from seqs a fastq file

VERSION

       version 1.4.5

SYNOPSIS

       Reads in a fastq file with tradis tags already attached to the start of the sequence
       Removes tags from the sequence and quality strings Outputs a file *.rmtag.fastq unless an
       out file is specified

          use Bio::Tradis::RemoveTags;

          my $pipeline = Bio::Tradis::RemoveTags->new(fastqfile => 'abc', tag => 'abc');
          $pipeline->remove_tags();

PARAMETERS

   Required
       ·   "fastqfile" - path to/name of file to filter

       ·   "tag" - TraDIS tag to remove

   Optional
       ·   "mismatch" - number of mismatches to allow when removing the tag. Default = 0

       ·   "outfile" - defaults to "file.rmtag.fastq" for and input file named "file.fastq"

METHODS

       "remove_tags" - output all reads with the tags removed to "outfile"

AUTHOR

       Carla Cummins <path-help@sanger.ac.uk>

COPYRIGHT AND LICENSE

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007