Provided by: libvcflib-tools_1.0.9+dfsg1-2_amd64 bug

NAME

       vcfentropy

SYNOPSIS

       vcfentropy options

DESCRIPTION

       Annotate  VCF  records with the Shannon entropy of flanking sequence.  Anotates the output
       VCF file with, for each record, EntropyLeft, EntropyRight, EntropyCenter,  which  are  the
       entropies  of  the sequence of the given window size to the left, right, and center of the
       record.  Also adds EntropyRef and EntropyAlt for each alt.

OPTIONS

              options:
                  -f, --fasta-reference  FASTA reference file to use to obtain flanking sequences
                  -w, --window-size      Size of the window over which to calculate entropy

              Type: metrics

EXIT VALUES

       0      Success

       not 0  Failure

SEE ALSO

       vcflib(1)

OTHER

LICENSE

       Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.  MIT licensed.

AUTHORS

       Erik Garrison and vcflib contributors.