Provided by: cmtk_2.1.0-1_amd64 bug

NAME

       glm - General Linear Model

SYNOPSIS

       glm [options] ctlfile imgfile_pattern [ctlfile imgfile_pattern ...]

DESCRIPTION

       Statistical modeling of pixel intensities in multiple images using a General Linear Model.

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --exclude-constant, -x
            Exclude automatic constant parameter from model.

       --normalize, -n
            Normalize model parameters w.r.t. data variances.

       --exp, -e
            Use exponential model rather than linear model.

       --ignore-parameter <string>, -i <string>
            Ignore parameter with given NUMBER (0..n-1). Can be repeated.

       --select-parameter <string>, -s <string>
            Select parameter with given NAME for model. Can be repeated.

       --crop <string>, -c <string>
            To save space/time, crop images: x0,y0,z0,x1,y1,z2

       --output-pattern <string>, -O <string>
            Filename  pattern  for output (default: 'model_%s_%02d_%s.nii') with %d for parameter
            number [Default: model_%s_%02d_%s.nii ]

AUTHORS

       Torsten Rohlfing, Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported  by
       the  National  Institute  of  Biomedical  Imaging  and  Bioengineering  under Grant No.R01
       EB008381 (PI: Torsten Rohlfing).