Provided by: cmtk_2.1.0-1_amd64 bug

NAME

       groupwise_init - Affine initialization for groupwise registration

SYNOPSIS

       groupwise_init [options] image0 [image1 ...]

DESCRIPTION

       Compute  initial  affine  alignment  for  a group of input images, which can be used as an
       input for groupwise registration

OPTIONS

   Global Toolkit Options (these are shared by all CMTK tools)
       --help
            Write list of basic command line options to standard output.

       --help-all
            Write complete list of basic and advanced command line options to standard output.

       --wiki
            Write list of command line options to standard output in MediaWiki markup.

       --man
            Write man page source in 'nroff' markup to standard output.

       --version
            Write toolkit version to standard output.

       --echo
            Write the current command line to standard output.

       --verbose-level <integer>
            Set verbosity level.

       --verbose, -v
            Increment verbosity level by 1 (deprecated; supported for backward compatibility).

       --threads <integer>
            Set maximum number of parallel threads (for POSIX threads and OpenMP).

   Main Options
       --template <string>, -t <string>
            Input filename for pre-defined template image.  [Default: NONE]

       --output-root <string>, -O <string>
            Root directory for all output files.  [Default: NONE]

       --output <string>, -o <string>
            Output filename for groupwise registration archive.  [Default: groupwise.xforms ]

       --output-average <string>
            Output filename for registered average image.  [Default: average.nii ]

       --average-cubic
            Use cubic interpolation for average image (default: linear)

       --no-output-average
            Do not write average image.

       --align-centers-of-mass
            Initially align centers of mass [default: centers of Bounding Boxes]

       --init-scales
            Initialize scale factors using first-order moments [default: off]

AUTHORS

       Torsten Rohlfing, Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff

LICENSE

       http://www.fsf.org/licensing/licenses/gpl.html

BUGS

       Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

       From April 2009 through September 2011, CMTK Development and Maintenance was supported  by
       the  National  Institute  of  Biomedical  Imaging  and  Bioengineering  under Grant No.R01
       EB008381 (PI: Torsten Rohlfing).