Provided by: embassy-domainatrix_0.1.0+20100721-3build1_amd64 bug

NAME

       domainsse - Add secondary structure records to a DCF file.

SYNOPSIS

       domainsse -dcfinfile infile -dccfdir directory -dcfoutfile outfile -logfile outfile

       domainsse -help

DESCRIPTION

       domainsse is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Utils:Database creation" command group(s).

OPTIONS

   Input section
       -dcfinfile infile
           This option specifies the name of the DCF file (domain classification file) (input). A
           'domain classification file' contains classification and other data for domains from
           SCOP or CATH, in DCF format (EMBL-like). The files are generated by using SCOPPARSE
           and CATHPARSE. Domain sequence information can be added to the file by using
           DOMAINSEQS.

       -dccfdir directory
           This option specifies the location of the domain CCF file (clean coordinate files)
           (input). A 'clean cordinate file' contains protein coordinate and derived data for a
           single PDB file ('protein clean coordinate file') or a single domain from SCOP or CATH
           ('domain clean coordinate file'), in CCF format (EMBL-like). The files, generated by
           using PDBPARSE (PDB files) or DOMAINER (domains), contain 'cleaned-up' data that is
           self-consistent and error-corrected. Records for residue solvent accessibility and
           secondary structure are added to the file by using PDBPLUS. Default value: ./

   Required section
   Advanced section
   Output section
       -dcfoutfile outfile
           This option specifies the name of the DCF file (domain classification file) with
           secondary structure records (output). A 'domain classification file' contains
           classification and other data for domains from SCOP or CATH, in DCF format
           (EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain sequence
           information can be added to the file by using DOMAINSEQS.

       -logfile outfile
           This option specifies the name of the DOMAINSSE log file. Default value: domainsse.log

BUGS

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or
       directly to the EMBOSS developers
       (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

SEE ALSO

       domainsse is fully documented via the tfm(1) system.

AUTHOR

       Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

COPYRIGHT

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.