Provided by: emboss_6.3.1-6ubuntu3_amd64
epestfind - Finds PEST motifs as potential proteolytic cleavage sites
epestfind -sequence sequence [-mwdata datafile] -window integer -order selection [-threshold float] -mono boolean -potential boolean -poor boolean -invalid boolean -map boolean -outfile outfile -graph xygraph epestfind -help
epestfind is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Protein:Motifs" command group(s).
Input section -sequence sequence Protein sequence USA to be analysed. -mwdata datafile Default value: Emolwt.dat Required section -window integer Minimal distance between positively charged amino acids. Default value: 10 -order selection Name of the output file which holds the results of the analysis. Results may be sorted by length, position and score. Default value: score Additional section -threshold float Threshold value to discriminate weak from potential PEST motifs. Valid PEST motifs are discriminated into 'poor' and 'potential' motifs depending on this threshold score. By default, the default value is set to +5.0 based on experimental data. Alterations are not recommended since significance is a matter of biology, not mathematics. Default value: +5.0 Advanced section -mono boolean Default value: N -potential boolean Decide whether potential PEST motifs should be printed. Default value: Y -poor boolean Decide whether poor PEST motifs should be printed. Default value: Y -invalid boolean Decide whether invalid PEST motifs should be printed. Default value: N -map boolean Decide whether PEST motifs should be mapped to sequence. Default value: Y Output section -outfile outfile Name of file to which results will be written. -graph xygraph
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
epestfind is fully documented via the tfm(1) system.
Debian Med Packaging Team <email@example.com> Wrote the script used to autogenerate this manual page.
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.