Provided by: embassy-phylip_3.69+20100721-3build1_amd64 bug


       fprotdist - Protein distance algorithm


       fprotdist -sequence seqsetall [-ncategories integer] -rate array -categories properties
                 [-weights properties] -method list -gamma list -gammacoefficient float
                 -invarcoefficient float -aacateg list -whichcode list -ease float -ttratio float
                 -basefreq array -outfile outfile [-printdata boolean] [-progress boolean]

       fprotdist -help


       fprotdist is a command line program from EMBOSS (“the European Molecular Biology Open
       Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).


   Input section
       -sequence seqsetall
           File containing one or more sequence alignments

       -ncategories integer
           Default value: 1

       -rate array

       -categories properties

       -weights properties

   Additional section
       -method list
           Default value: j

       -gamma list
           Default value: c

       -gammacoefficient float
           Default value: 1

       -invarcoefficient float
           Default value: 1

       -aacateg list
           Default value: G

       -whichcode list
           Default value: u

       -ease float
           Default value: 0.457

       -ttratio float
           Default value: 2.0

       -basefreq array
           Default value: 0.25 0.25 0.25 0.25

   Output section
       -outfile outfile

       -printdata boolean
           Default value: N

       -progress boolean
           Default value: Y


       Bugs can be reported to the Debian Bug Tracking system (, or
       directly to the EMBOSS developers


       fprotdist is fully documented via the tfm(1) system.


       Debian Med Packaging Team <>
           Wrote the script used to autogenerate this manual page.


       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package.
       It can be redistributed under the same terms as EMBOSS itself.